Serological and genetic characterization of Flavobacterium psychrophilum isolated from farmed salmonids in Turkey
dc.contributor.author | Satıcıoğlu, İzzet Burçin | |
dc.contributor.author | Wiklund, Tom | |
dc.contributor.buuauthor | Duman, Muhammed | |
dc.contributor.buuauthor | Altun, Soner | |
dc.contributor.department | Uludağ Üniversitesi/Veterinerlik Fakültesi/Su Hayvanları Hastalıkları Bölümü. | tr_TR |
dc.contributor.orcid | 0000-0001-7707-2705 | tr_TR |
dc.contributor.orcid | 0000-0001-9096-875X | tr_TR |
dc.contributor.researcherid | T-1697-2019 | tr_TR |
dc.contributor.researcherid | AAG-8518-2021 | tr_TR |
dc.contributor.scopusid | 55568071100 | tr_TR |
dc.contributor.scopusid | 56269221600 | tr_TR |
dc.date.accessioned | 2024-01-30T11:27:57Z | |
dc.date.available | 2024-01-30T11:27:57Z | |
dc.date.issued | 2018-11 | |
dc.description.abstract | Turkey was the largest rainbow trout producer of the European countries in 2016, and the reason for this production is mainly attributed to its egg and fry production. Flavobacterium psychrophilum cause the highest rates of mortality in the starting to feeding stages of the fish. In the present study, twenty-five F. psychrophilum isolates recovered from rainbow trout, coruh trout and brook trout were analysed by RAPD-PCR, ERIC-PCR, REP-PCR and PCR-RFLP, including 16S rRNA, gyrA and gyrB gene regions and PCR-based serotyping method. The PCR-based molecular analysis showed that the isolates could not be differentiated exactly according to isolation source and geographical region. Most isolates were of type-1 and type-2, and some of them were of type-0 and type-3; in addition, one isolate showed a unique serotype. The combined analysis results showed that F. psychrophilum isolates discriminated as five different genotypes and all isolates were successfully discriminated based on host. | en_US |
dc.identifier.citation | Satıcıoğlu, İ. B. vd. (2018). ''Serological and genetic characterization of Flavobacterium psychrophilum isolated from farmed salmonids in Turkey''. Journal of Fish Diseases, 41(12), 1899-1908. | en_US |
dc.identifier.doi | https://doi.org/10.1111/jfd.12901 | |
dc.identifier.endpage | 1908 | tr_TR |
dc.identifier.issn | 0140-7775 | |
dc.identifier.issn | 1365-2761 | |
dc.identifier.issue | 12 | tr_TR |
dc.identifier.pubmed | 30294785 | tr_TR |
dc.identifier.scopus | 2-s2.0-85054489668 | tr_TR |
dc.identifier.startpage | 1899 | tr_TR |
dc.identifier.uri | https://onlinelibrary.wiley.com/doi/10.1111/jfd.12901 | |
dc.identifier.uri | https://hdl.handle.net/11452/39394 | |
dc.identifier.volume | 41 | tr_TR |
dc.identifier.wos | 000449651200012 | tr_TR |
dc.indexed.pubmed | PubMed | en_US |
dc.indexed.scopus | Scopus | en_US |
dc.indexed.wos | SCIE | en_US |
dc.language.iso | en | en_US |
dc.publisher | Wiley | en_US |
dc.relation.collaboration | Yurt içi | |
dc.relation.collaboration | Yurt dışı | |
dc.relation.journal | Journal of Fish Diseases | en_US |
dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi | tr_TR |
dc.relation.tubitak | 116O626 | |
dc.rights | info:eu-repo/semantics/closedAccess | en_US |
dc.subject | Fisheries | en_US |
dc.subject | Marine & freshwater biology | en_US |
dc.subject | Veterinary sciences | en_US |
dc.subject | F. psychrophilum | en_US |
dc.subject | Molecular serotyping | en_US |
dc.subject | PCR-RFLP | en_US |
dc.subject | RAPD-PCR | en_US |
dc.subject | Rainbrow-trout fry | en_US |
dc.subject | Bacterial coldwater disease | en_US |
dc.subject | Oncorhynchus-mykiss | en_US |
dc.subject | Fish | en_US |
dc.subject | Resistance | en_US |
dc.subject | Diversity | en_US |
dc.subject.emtree | Bacterial RNA | en_US |
dc.subject.emtree | DNA topoisomerase (ATP hydrolysing) | en_US |
dc.subject.emtree | RNA 16S | en_US |
dc.subject.emtree | Article | en_US |
dc.subject.emtree | Bacterium isolate | en_US |
dc.subject.emtree | Controlled study | en_US |
dc.subject.emtree | Epidemic | en_US |
dc.subject.emtree | Flavobacterium | en_US |
dc.subject.emtree | Flavobacterium psychrophilum | en_US |
dc.subject.emtree | Gene amplification | en_US |
dc.subject.emtree | Multiplex polymerase chain reaction | en_US |
dc.subject.emtree | Nonhuman | en_US |
dc.subject.emtree | Oncorhynchus kisutch | en_US |
dc.subject.emtree | Oncorhynchus mykiss | en_US |
dc.subject.emtree | Polymerase chain reaction | en_US |
dc.subject.emtree | Restriction fragment length polymorphism | en_US |
dc.subject.emtree | Salmonid | en_US |
dc.subject.emtree | Salmonine | en_US |
dc.subject.emtree | Salvelinus fontinalis | en_US |
dc.subject.emtree | Serology | en_US |
dc.subject.emtree | Serotyping | en_US |
dc.subject.emtree | Animal | en_US |
dc.subject.emtree | Classification | en_US |
dc.subject.emtree | Fish disease | en_US |
dc.subject.emtree | Fishery | en_US |
dc.subject.emtree | Flavobacteriaceae infection | en_US |
dc.subject.emtree | Flavobacterium | en_US |
dc.subject.emtree | Genetics | en_US |
dc.subject.emtree | Microbiology | en_US |
dc.subject.emtree | Physiology | en_US |
dc.subject.emtree | Salmonine | en_US |
dc.subject.emtree | Turkey (bird) | en_US |
dc.subject.emtree | Veterinary medicine | en_US |
dc.subject.mesh | Animals | en_US |
dc.subject.mesh | DNA gyrase | en_US |
dc.subject.mesh | Fish diseases | en_US |
dc.subject.mesh | Fisheries | en_US |
dc.subject.mesh | Flavobacteriaceae infections | en_US |
dc.subject.mesh | Flavobacterium | en_US |
dc.subject.mesh | Oncorhynchus mykiss | en_US |
dc.subject.mesh | Polymerase chain reaction | en_US |
dc.subject.mesh | Polymorphism, restriction fragment length | en_US |
dc.subject.mesh | RNA, bacterial | en_US |
dc.subject.mesh | RNA, ribosomal, 16s | en_US |
dc.subject.mesh | Serotyping | en_US |
dc.subject.mesh | Trout | en_US |
dc.subject.mesh | Turkey | en_US |
dc.subject.scopus | Flavobacterium Psychrophilum; Menaquinone 6; Phylogeny | en_US |
dc.subject.wos | Fisheries | en_US |
dc.subject.wos | Marine & freshwater biology | en_US |
dc.subject.wos | Veterinary sciences | en_US |
dc.title | Serological and genetic characterization of Flavobacterium psychrophilum isolated from farmed salmonids in Turkey | en_US |
dc.type | Article | en_US |
dc.wos.quartile | Q2 | en_US |
dc.wos.quartile | Q2 | en_US |
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