Publication:
Differentially expressed genes in leaf, meristematic and flower tissues of garlic

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dc.contributor.authorSenalik, Douglas A.
dc.contributor.authorSimon, Philipp W.
dc.contributor.authorWako, T.
dc.contributor.buuauthorİpek, Meryem S.
dc.contributor.buuauthorİpek, Ahmet
dc.contributor.buuauthorAydoğan, Çiğdem
dc.contributor.departmentZiraat Fakültesi
dc.contributor.departmentBahçe Bitkileri Bölümü
dc.contributor.orcid0000-0003-4884-5304
dc.contributor.researcheridAAH-3233-2021
dc.contributor.researcheridAAG-6532-2020
dc.contributor.scopusid16031208900
dc.contributor.scopusid6603912487
dc.contributor.scopusid55481474200
dc.date.accessioned2022-01-21T07:19:20Z
dc.date.available2022-01-21T07:19:20Z
dc.date.issued2012
dc.descriptionBu çalışma, 21-24 Mayıs 2012 tarihleri arasında Fukuoka[Japonyo]’da düzenlenen 6. International Symposium on Edible Alliaceae’da bildiri olarak sunulmuştur.
dc.description.abstractDifferential gene expression analysis has been investigated to reveal important genes in many plant species. Identification of genes controlling metabolic pathways in garlic could contribute to the understanding of garlic genetic. In this study, transcript (mRNA) profile of differentially expressed genes was determined in leaf, meristematic and flower tissues of three genetically divers garlic clones at different developmental stages using cDNA-AFLP approach. In total, 352 differentially expressed transcript-derived fragments (TDFs) were evaluated from 20 primer combinations. While seven TDFs fragments expressed only in meristematic tissues, 30 TDFs expressed only in leaf tissues. Twenty seven fragments expressed in both meristematic and leaf tissues with intensity polymorphism and two fragments differentially expressed in flower tissues. BLAST analysis of these tissue specific expressed fragments revealed that some genes have significant similarities with previously determined sequences in the database of NCBI GenBank while some of them are unique to garlic genome. These tissue specific expressed genes can be used to develop tissue specific markers for garlic genome.
dc.description.sponsorshipInt Soc Hort Sci (ISHS)
dc.identifier.citationİpek, M. vd. (2012). "Differentially expressed genes in leaf, meristematic and flower tissues of garlic". ed. T. Wako. Acta Horticulturae-VI International Symposium on Edible Alliaceae, Acta Horticulturae. 969, 53-57.
dc.identifier.endpage57
dc.identifier.isbn978-90-66056-95-4
dc.identifier.issn0567-7572
dc.identifier.scopus2-s2.0-84872050813
dc.identifier.startpage53
dc.identifier.urihttps://doi.org/10.17660/ActaHortic.2012.969.3
dc.identifier.urihttp://hdl.handle.net/11452/24205
dc.identifier.volume969
dc.identifier.wos000324531800003
dc.indexed.wosCPCIS
dc.language.isoen
dc.publisherInt Soc Horticultural Science
dc.relation.collaborationYurt dışı
dc.relation.journalActa Horticulturae-VI International Symposium on Edible Alliaceae, Acta Horticulturae
dc.relation.publicationcategoryKonferans Öğesi - Uluslararası
dc.relation.tubitak105O551
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectAgriculture
dc.subjectPlant sciences
dc.subjectAllium sativum
dc.subjectDifferential gene expression analysis
dc.subjectcDNA-aflp
dc.subjectTranscript-derived fragments
dc.subjectAflp markers
dc.subjectDiversity
dc.subject.scopusGarlic; Allium Roseum; Bolting
dc.subject.wosAgronomy
dc.subject.wosPlant sciences
dc.subject.wosHorticulture
dc.titleDifferentially expressed genes in leaf, meristematic and flower tissues of garlic
dc.typeProceedings Paper
dspace.entity.typePublication
local.contributor.departmentZiraat Fakültesi/Bahçe Bitkileri Bölümü
local.indexed.atScopus
local.indexed.atWOS

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